Tong LI

@BioinfoTongLI

Wellcome Sanger Institute Hinxton

Followers

Following

Public Repos

Private Repos

Language Breakdown

Lines of code distribution across 24 owned repositories

16.0M Total LOC

Jupyter Notebook

14,953,087 lines

93.4%

N/A

Python

401,242 lines

2.5%

N/A

Java

369,210 lines

2.3%

N/A

Nextflow

164,232 lines

1.0%

N/A

Shell

115,546 lines

0.7%

N/A

Other

14,725 lines

0.1%

N/A

I-Shaped Developer

I-shaped

Specialist — deep expertise in Jupyter Notebook

Jupyter Notebook

Python

Java

Nextflow

Shell

Collaboration Network

Global Impact visualization

LIVE

0 active collaborators

Repos

PRs

Growth

+18%

Top Collaborators

No collaborator data yet.

Coding Streak

Contribution activity over the past year

1 day

267

Contributions

251

Commits

Pull Requests

Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun

Based on GitHub activity

Less

Followers 67

Abraham Trueba

@crisprking

Ebru Kocakaya

@ebrukocakaya

RichardTang-Aden

@RichardTang-Aden

Timothy @aden

@TimothyZhang7

vincentjiang777

@vincentjiang777

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Following

57 total

Chaofan Lin

@SiriusNEO

hycai

@wikk-chy

Koushouu

@Koushouu

Yohsuke T. Fukai

@yfukai

Miguel A. Ibarra-Arellano

@migueLib

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Synced via GitHub

Top Repositories

wf_yolo

a minimal workflow to run yolo predict

5 0

Nextflow

to_ome_tif

nextflow DSL2 pipeline (leveraging ![bioformats2raw](https://github.com/glencoesoftware/bioformats2raw)/[raw2ometiff](https://github.com/glencoesoftware/raw2ometiff)) to convert almost any images to ome.tiff/ome.zarr

4 0

Nextflow

Image-ST

A pipeline to generate count matrix for different spatial technologies. ISS/MERFISH-like data are decoded using PoSTcode

workflow-segmentation

2 0

Python

workflow-registration

2 0

Jupyter Notebook

nf-bioimage-spec

Specification and templates for nf-core bioimage analysis modules

1 0

Shell

nf-deconvolution

nextflow module/subworkflow for image deconvolution

Open Source Impact

Contributions to external projects

42 merged PRs

cellgeni/dockage

haniffalab/webatlas-app

BioImageTools/nextflow-modules

BioImageTools/ome-zarr-image-analysis-nextflow

cellgeni/Image-ST

cellgeni/nf-modules

cellgeni/Spatial_Hackathon_2025

Contributed to 7 repositories